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PubMed MCP Server

@cyanheads

A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed via NCBI E-utilities. Includes a research agent scaffold. STDIO & HTTP
Overview

What is PubMed MCP Server?

The PubMed MCP Server is a Model Context Protocol (MCP) server that enables AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed using NCBI E-utilities.

How to use PubMed MCP Server?

To use the PubMed MCP Server, integrate it with your MCP client and configure it with your NCBI API key. You can then call various tools provided by the server to perform tasks like searching articles, fetching content, and generating research plans.

Key features of PubMed MCP Server?

  • Comprehensive access to PubMed's biomedical literature database.
  • Advanced search capabilities with filtering options.
  • Tools for fetching detailed article information and citation analysis.
  • Ability to generate structured research plans and visualizations.
  • Modular architecture with robust error handling and logging.

Use cases of PubMed MCP Server?

  1. Automating literature searches for research projects.
  2. Analyzing citation networks and related articles.
  3. Generating visual data representations from publication metadata.
  4. Supporting AI-driven research workflows in biomedical fields.

FAQ from PubMed MCP Server?

  • What is the Model Context Protocol (MCP)?

    MCP is a protocol that allows applications to communicate and interact with various services in a standardized way.

  • Is there a limit on API requests?

    Yes, there are rate limits imposed by NCBI for API requests, which can be managed by using an API key.

  • Can I use this server for non-biomedical research?

    The server is specifically designed for biomedical literature, but the underlying architecture can be adapted for other domains.

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