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Bio-Agents MCP

@dogeplusplus

MCP servers for Protein Data Bank, ChemBL, and other life science data (WIP), with Ollama client for local testing.
Overview

What is Bio-Agents MCP?

Bio-Agents MCP is a collection of microservices and clients designed for natural language interaction with biological databases, including the Protein Data Bank and ChEMBL.

How to use Bio-Agents MCP?

To use Bio-Agents MCP, configure your environment, start the services using Docker, and launch the web interface to begin querying biological data.

Key features of Bio-Agents MCP?

  • Natural language interface for biological databases
  • Support for Protein Data Bank and ChEMBL APIs
  • Modular architecture allowing independent service operation
  • Built using the FastMCP framework for asynchronous operations

Use cases of Bio-Agents MCP?

  1. Querying structural data from the Protein Data Bank.
  2. Accessing chemical data from ChEMBL.
  3. Interacting with biological data using natural language queries.

FAQ from Bio-Agents MCP?

  • What databases does Bio-Agents MCP support?

Bio-Agents MCP currently supports the Protein Data Bank and ChEMBL databases.

  • How do I start using the service?

Follow the quick start guide to configure your environment and launch the services.

  • Is there documentation available?

Yes, each module has its own README with detailed documentation.

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