🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.
Overview
What is PubTator MCP Server?
PubTator MCP Server is a biomedical literature annotation and relationship mining server that provides convenient access to the PubTator3 system through the Model Context Protocol (MCP). It allows AI models to programmatically search scientific literature, obtain annotation information, and analyze entity relationships.
How to use PubTator MCP Server?
To use the PubTator MCP Server, you can either install it via Smithery or manually clone the repository and install dependencies. After installation, you can run the server directly or use Docker for deployment.
Key features of PubTator MCP Server?
- Literature Annotation Export in multiple formats
- Entity ID Lookup for biological concepts
- Relationship Mining to discover biomedical relationships
- Literature Search by keywords and entity IDs
- Batch Processing for exporting annotation information
Use cases of PubTator MCP Server?
- Annotating biomedical literature for research purposes.
- Mining relationships between different biological entities.
- Facilitating AI models in accessing and analyzing scientific literature.
FAQ from PubTator MCP Server?
- What programming language is used?
The server is built using Python.
- Is there a rate limit for API requests?
Yes, the maximum request rate is 3 requests per second.
- Can I use Docker for deployment?
Yes, a Dockerfile is provided for easy deployment.